1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacccaactcatgcctttattattgattgtattgaagtattgaacaaccaattgatgctgttaggaaaattttccctgaggaacagtctttaatctttttggttatctatcttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGTTCATTACTGCTGCCGCTTAAGGTCAACAACACCTTCATTTATAGTATT
species | Glycine max |
transcript | GLYMA01G03530.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAG GTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|15813176|gb|BI785451.1|BI785451
genomic: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAGgtaacccaac ... ttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAG GTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|151411745|gb|EV281556.1|EV281556
genomic: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAGgtaacccaac ... ttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GAGGATATTGGCATCCCCATTGAG GTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|13787913|gb|BG650505.1|BG650505
genomic: GAGGATATTGGCATCCCCATTGAGgtaacccaac ... ttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAG GTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGEST: gi|213607883|gb|DB983852.1|DB983852
genomic: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAGgtaacccaac ... ttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
EST: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAG GTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
genomic: GTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAGgtaacccaac ... ttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAG
aaattttccctgaggaacagtctttaatctttttggttatctatcttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGTTCATTACTGCTGCCGCTTAAGGTCAACAACACCTTCATTTATAGTATT
ctttaat putative branch site (score: 4)
ttatctatctttttt putative PPT
ttatctatctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccaactcatgcctttattattgattgtattgaagtattgaacaaccaattgatgctgttaggaaaattttccctgaggaacagtctttaatctttttggttatctatcttttttacagGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGTTCATTACTGCTGCCGCTTAAGGTCAACAACACCTTCATTTATAGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC