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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattgggcatgatatttgttgattccacagaataaagatgatttatttattaatattcaataatcctttctactaacatttcatgatttgttgctttgttaattgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATGCCAAGGGTG

Basic information

species Glycine max
transcript GLYMA01G00870.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 12
gtgagttcattgggcatgatatttgttgattccacagaataaagatgatttatttattaatattcaataatcctttctactaacatttcatgatttgttgctttgttaattgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATGCCAAGGGTG
             | |  |||   |   || | | | || | ||   |    | || |||||   ||         |||| | |  |   || |||  |  || | |  ||| | ||||| |||| | ||| ||||||||| | || |||||||| ||||||||||||||||||||| | ||||| || ||||| || |||||||||    |  | |   
-----------caggagaataaaaga-aatgctatataagatagtacaacattctagtaatagggaaa--------ctaccacctctaactgctttacttgttggatggttggtctgcagCGAATTATTGAAAGACAGAACAAAGTTGTGATAACAGATAGAATGTGGGCTAGGCTTCTGTCTTCTACCAATCAGCCAAGCTTTTTGAGCCCTGAAGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321851|gb|FK013229.1|FK013229
EST:     GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|15202568|gb|BI425469.1|BI425469
EST:     GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|6725492|gb|AW309891.1|AW309891
EST:     GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|31306909|gb|CD392112.1|CD392112
EST:     GCTATACAAGTGGACTTGTGAATGGAAGACGAACTTATATACCCTTCTAT                         AGAATCACTGAGAGACAGAATCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
EST: gi|7693069|gb|AW761167.1|AW761167
EST:     GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTAT                         AGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT
genomic: GCTATACAAGTGGACTTGTGAATGGAAGACAAACTTATATACCCTTCTATgtgagttcat ... tgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatcctttctactaacatttcatgatttgttgctttgttaattgttatgcagAGAATCACTGAGAGACAGAACCACGTAGTGATAACTGATAGAATGTGGGCTAGGCTTTTATCTTCAACAAATCAACCCAGCTTTTTGGATGCCAAGGGTG
                                    tttgttaattgttat  TA-rich tract