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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgactgtaatccacaatagtatttggtatttacaaaatcgattcaatctgtttggagaatcaattgtattattcaaaatattttctccatcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG

Basic information

species Glycine max
transcript GLYMA01G00430.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733901|gb|BM527876.1|BM527876
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|22524821|gb|BU083632.1|BU083632
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|18732433|gb|BM527041.1|BM527041
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|19269470|gb|BM885726.1|BM885726
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|13789963|gb|BG652554.1|BG652554
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|213590932|gb|DB973729.1|DB973729
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
EST: gi|24136389|gb|BU926899.1|BU926899
EST:     TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAG                         AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG
genomic: TAGACGTGAAGCGATTATATGATTCTGTAAATGTCATTCTCTCACTACAGgtagctagac ... atcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctgtttggagaatcaattgtattattcaaaatattttctccatcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG
                                     ttttctccatcatt  CT-rich tract
            agaatcaattgtatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgactgtaatccacaatagtatttggtatttacaaaatcgattcaatctgtttggagaatcaattgtattattcaaaatattttctccatcattgcagAATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
-ttgactg
- - - - - atccaca
- - - - - - - - - - - - - - - - - caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg