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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcttttataatcatatacaatgttcattgccattttctggctgatagtttattctaatgtctttaccttaatttcttttgattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 11
gttagtcttttataatcatatacaatgttcat-tgccatt-ttctggctgatagtttattctaatgtctttaccttaatttcttttgatt--ttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG
                  |      | || || ||| ||| || ||  | ||  | | |  |  |||||| | || |||| | | | |||  |||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||||||| | |||||||  ||||||| |||||||||||||| 
-----------------gtgagtcctattaatatgcaattgttgtgcattatgttctgtctttctgtctt-atctgaattacctgttattctttcagTTACATATCATATCTTCCTTTGGCACACATCTATGAACGGGCCAACCAGGTCATGACAGCATATTTTGGAGTTGCAGTTGGATTCTACCAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294241|gb|FG986330.1|FG986330
EST:     GCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGT                         TTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT
genomic: GCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGTgttagtcttt ... tgattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT
EST: gi|7692762|gb|AW760861.1|AW760861
EST:     GCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGT                         TTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT
genomic: GCAAGTGTTGCTGGGAGTACTATGGACGAGAAATTCGGTCCTTCTGATGTgttagtcttt ... tgattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctggctgatagtttattctaatgtctttaccttaatttcttttgattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG
                                      tttcttttgattttc  CT-rich tract
                                  ttaatttcttttgatt  TA-rich tract