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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctcatggttgccaactgttttggcttttgaatgtttctatgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGTTTACAAA

Basic information

species Glycine max
transcript GLYMA20G24820.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24820.2 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g50230.1 (Oryza sativa), 3'ss of exon 10
--------------------------------------------------------------gtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctca-tggttgccaactgttttggcttttgaatgtttcta-tgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGTTTACAAA-
                                                                   | |  |  |  ||| ||    |  |   |||||   || |   | ||| | |||||  ||      || |   ||   ||||  |  |||||| ||||| ||||| |||||||||||||||||||| ||||| |  || || || || | |||  | || | ||| ||  |  | ||    || |  || || 
gtgagttacatacttgttcagtgttccttatttgactatctttcttgacttcgacactgttttcttttgcagtcaaactcaaaacaaatcccctctttttcaatgcttggtttcttaatggtttgcagacagattagtgatttcttgttcttcctgcagTTCTTGGGTTGCCTTATGATCATCCACTGGATATGTGGTCAGCTGGGTGCTGCTTATCTGAACT-TAAACAGGAAAAATCTTATTTGATGGTTCAACGAAC

upper sequence: GLYMA20G24820.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------------------gtaagtcccatagatttcataatcc-ctaactgtttttttcttgttcaatgtctcatggttgccaactgttttggcttttgaatgtttc--tatgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGTTTACAAA
                                                  |||    | |   ||   || |   | || |  || ||| |||   ||||     ||  |   || |  ||| |  | | | | ||||  | |||||| || |||||||| ||||| |||||  |||||||||||||||| |||||||||||||||||| | ||||  || || |||||||| || ||   | ||||
gtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattattt-ttggagaatgc----tgtctcttaaatcatttagtctctaattctttccttctgcagTTCTAGGCTTGCCTTATGACCATCCCATGGATATTTGGTCTGTTGGTTGTTGTTTGTATGAGCTTTATACGGGAAAAGTTCTTTTTCCGGGTCCTTCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316086|gb|GR825895.1|GR825895
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtccca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcaatgtctcatggttgccaactgttttggcttttgaatgtttctatgcagTACTTGGCTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGTTTACAAA
                                          tgtttct  CT-rich tract
                                   ttttgaat  TA-rich tract