1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgatataaaaaagctacaatattttctttgctattttaaatgtagttctgaacaatatatatatatatatatatacatacatatatgtatgtatgtatgtatgtatattctagagtaattgtaaattttagtttatctgctccttggtataaaaaattaacttcactttccttattcttttgtgcagCTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATCTAACGTGCTTGAACGGCTGGAAACAAAGATTGTGTCTCCTGGTATTGGAAATGAGTCGGCGG
species | Glycine max |
transcript | GLYMA20G01680.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAG CTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATCTAACGTGCTTGAAEST: gi|193514126|gb|FK466984.1|FK466984
genomic: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAGgtgatataaa ... ttttgtgcagCTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATCTAACGTGCTTGAA
EST: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAG CTTTTTATTAAAGTGEST: gi|207797957|gb|GD768521.1|GD768521
genomic: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAGgtgatataaa ... ttttgtgcagCTTTTTATTAAAGTG
EST: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAG CTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATACTAACGTGCTTGA
genomic: TGGAATTTGGCCACATCCAAGAGGAGTGGATTATAAAGGAGGCAGGAGAGgtgatataaa ... ttttgtgcagCTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATAT-CTAACGTGCTTGA
ttatctgctccttggtataaaaaattaacttcactttccttattcttttgtgcagCTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATCTAACGTGCTTGAACGGCTGGAAACAAAGATTGTGTCTCCTGGTATTGGAAATGAGTCGGCGG
aattaac putative branch site (score: 2)
cttcactttccttatt CT-rich tract
tataaaaaattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatataaaaaagctacaatattttctttgctattttaaatgtagttctgaacaatatatatatatatatatatacatacatatatgtatgtatgtatgtatgtatattctagagtaattgtaaattttagtttatctgctccttggtataaaaaattaacttcactttccttattcttttgtgcagCTTTTTATTAAAGTGGAAACCTTGTATGTGGAGATATCTAACGTGCTTGAACGGCTGGAAACAAAGATTGTGTCTCCTGGTATTGGAAATGAGTCGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA