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...aaaaactatgcagtgtgtgtaaatttacagtatcgtgttatttatgaaaccattgtaactttttaagttaataagtctttaacattatacattaatacagTGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAGAGACACGACTCAGGTTCAGCTTGGAATGCCAACTTTACTTTGCCCCAGA
species | Glycine max |
transcript | GLYMA19G43790.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACATCATTTAT TGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAGEST: gi|19054050|gb|BM732717.1|BM732717
genomic: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACATCATTTATgtaagttgaa ... attaatacagTGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAG
EST: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACATCATTTAT TGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAG
genomic: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACATCATTTATgtaagttgaa ... attaatacagTGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAG
gaaaccattgtaactttttaagttaataagtctttaacattatacattaatacagTGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAGAGACACGACTCAGGTTCAGCTTGGAATGCCAACTTTACTTTGCCCCAGA
tttttaagttaataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaactatgcagtgtgtgtaaatttacagtatcgtgttatttatgaaaccattgtaactttttaagttaataagtctttaacattatacattaatacagTGTATGAGAAGATATTAATGCCCCCGATCGGATGGACTGGCCATTGTTCAGAGACACGACTCAGGTTCAGCTTGGAATGCCAACTTTACTTTGCCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - -ctatgca
- - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - tgaaacc