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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaaaatggagctgtactgctctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtatatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaaaatggagctgtactgctctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC
                                                        |     |  |   |    | |    || |   |||| |    | |   |      ||||   ||||      ||   |  ||  ||||    ||||       |||| | ||||||||||||||| | ||||| ||||| || |||||| ||| ||| ||| |||||||||| || || ||||||||| | ||||| |||||  |||
--------------------------------------------------------tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaat-------gcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407080|gb|FK375255.1|FK375255
EST:     ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACCCATCCTTTCTTTGATGA
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGA
EST: gi|26047711|gb|CA784420.1|CA784420
EST:     ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|6963904|gb|AW432597.1|AW432597
EST:     ATGTAGTATCAAGACTACTACAATACTGCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTGGACCCATCGCTT-CTATGATGAACTACGAGACCCAAACAC
genomic: ATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatat ... tcttgtgcagTTAGATGCCTTGACCCATC-CTTTCTTTGATGAACTTCGTGACCCAAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC
                         tttttactttatcttc  TA-rich tract