1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tacttttagaaactccatcgtgtaatgtatattttctttttatcatgggacattacataactgtattatgtgtaatagtttttggtctataatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG
species | Glycine max |
transcript | GLYMA19G40930.4 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGTAGGCTGATGTCAAEST: gi|209700236|gb|BW664461.1|BW664461
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTG-AGGCTGATGTCAA
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|193400954|gb|FK366733.1|FK366733
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAA-TGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTTGAGGCTGATGTCAAAGCGAGGACAAAGGGEST: gi|193495226|gb|FK463210.1|FK463210
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTT-GAGGCTGATGTCAAAGCGAGGACAAAGGG
EST: AATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|58024431|gb|CX711172.1|CX711172
genomic: AATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|22932318|gb|BU549457.1|BU549457
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|208271089|gb|GE066163.1|GE066163
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: GGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|193480397|gb|FK446803.1|FK446803
genomic: GGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: TGAACCAAAGAAAAATGTATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|58014455|gb|CX701197.1|CX701197
genomic: TGAACCAAAGAAAAATG-ATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|193616107|gb|FK571925.1|FK571925
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTEST: gi|213608486|gb|DB974743.1|DB974743
genomic: AATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGT
EST: GCTTTGAACCAAAGAAAAAT-ATTAATT-GCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATAACAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|209707572|gb|BW680942.1|BW680942
genomic: GCTTTGAACCAAAGAAAAATGA-T-CTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTEST: gi|193370419|gb|FK334069.1|FK334069
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTAGAGGCTGATEST: gi|48574957|gb|CO036162.1|CO036162
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTT-GAGGCTGAT
EST: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAG GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
genomic: AAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGgtatgaattg ... aatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCT
tgggacattacataactgtattatgtgtaatagtttttggtctataatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG
acataac putative branch site (score: 3)
tattatgtgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttttagaaactccatcgtgtaatgtatattttctttttatcatgggacattacataactgtattatgtgtaatagtttttggtctataatgctttagGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - ctccatc
- - - - - - - - - - - - - - - - - - - - - tcatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgt