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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaacccacatcccatgctttcgtttattttttaaaacgattttattttgttttgaatttgtaaataacgtatttctctacatgctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGTGCTACTTCTTTGCCTTCACTTAATTATTCTCTTG

Basic information

species Glycine max
transcript GLYMA19G39740.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39740.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os01g07720.4 (Oryza sativa), 3'ss of exon 12
----------gtaggttaacccacatcccatgctttcgtttattt-tttaaaacgattttattttgtt--ttgaatttgtaaataacgtatttct-ctacatgctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGTGCTACTTCTTTGCCTTCACTTAATTATTCTCTTG
               |  |    | |      |||  |||    | || | ||| |||||          ||| |||| |   |    |||  |  |    || ||   |||  | ||||| ||  | |  |||||||| |||||||||||||||||||| |    |  ||| ||| ||||  | || | | ||||| |    ||  | || 
gtaacacgctactattgcatggtccttttccacttcagttggcatattcagaaccattttggcaaaccacttggatttattc-tcttatatcaccgccctttgttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACTGCCTATTCGTCACTGCTGTTGCTATTCATTCACATCTCCATCTTGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338108|gb|CO981974.1|CO981974
EST:     TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCG                         TTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
genomic: TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCGgtaggttaac ... gctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
EST: gi|254346666|gb|GR856388.1|GR856388
EST:     TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCG                         TTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
genomic: TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCGgtaggttaac ... gctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
EST: gi|10845141|gb|BF068302.1|BF068302
EST:     TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCG                         TTTGATTTTGTTCGGGGGAGTGGAGCTGGGCTGG
genomic: TATAGCTTACCCTACTTGTTGTGGAGAACGAATTACCCAACATTGCTGCGgtaggttaac ... gctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttattttgttttgaatttgtaaataacgtatttctctacatgctcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGTGCTACTTCTTTGCCTTCACTTAATTATTCTCTTG
                        aaataac  putative branch site (score: 2)
     tattttgttttgaatt  TA-rich tract