1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcttttgatacatattgctccagtactggtactatatatatatatatattgtgcctagactgtaagattttcaattgatgatggttctcgatttgtgtagGTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGATAAGTTATTGTAAAAGTGGTAGATCATGCCTTTGTCTTTTTCCCAGGTA
species | Glycine max |
transcript | GLYMA19G39210.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAG GTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGAEST: gi|18732588|gb|BM527126.1|BM527126
genomic: TTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAGgtaccatcat ... atttgtgtagGTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGA
EST: TTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAG GTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGA
genomic: TTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAGgtaccatcat ... atttgtgtagGTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGA
atattgtgcctagactgtaagattttcaattgatgatggttctcgatttgtgtagGTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGATAAGTTATTGTAAAAGTGGTAGATCATGCCTTTGTCTTTTTCCCAGGTA
aattgat putative branch site (score: 4)
taagattttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttgatacatattgctccagtactggtactatatatatatatatattgtgcctagactgtaagattttcaattgatgatggttctcgatttgtgtagGTCAGATCCAGAGGCACATAAAGAAAATGGTTGAAAGAAGCTTTTGGTTGATAAGTTATTGTAAAAGTGGTAGATCATGCCTTTGTCTTTTTCCCAGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - -tgctcca
- - - - - - - - - - - - -ctggtac
- - - - - - - - - - - - - - - - - - - - - - - - ttgtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgatg