Sequence
atgc intronic sequence ATGC exonic sequencegttttaccatcatttactgtagtataatgcaggttattcacttctgtattccctgttgtatcatgtgtatatatgtgacaatgttgaaattgcagATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCAGCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAG
Basic information
species | Glycine max |
transcript | GLYMA19G37310.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G37310.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G53090.2 (Arabidopsis thaliana), 3'ss of exon 9
--------gttttaccatcatttactgtagtataatgcaggttattc------acttctgt-attccctgttgtatcatgtgtatatatgtgacaatgttgaa-----attgcagATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCAGCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAG
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gtatcgtctttttaacgttttataaataatcttaaggtcaatcatcctgcaaaacaaaagttacttcataattaatgaggtaaacatgttgtcctatgtcttgtctccaatgcagATTGTGCCCTTTTCAAATGCATTTTACAGAGGATTGACTGACCTTATATCTCCTGCTTGGTTGAAACTATTTAATGCCCATGAATTTAATCAG
upper sequence: GLYMA19G37310.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 9
------------------------------------gttttaccatc-atttactgtagtat-aatgcagg-ttattcacttctgtattccctgttgtatcatgtgtatatatgtgacaatgttgaaattgcagATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCAGCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAG
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gtgtagtgcacaatttggaaattctgtagacctatctatttataacagatttaccttgttatcaatattgaattgaatttatctgc-ttccatgctaaattttccttccac---tgtcaatgtttgaattgcagATGCTGCCTCTATCAAATGCATTCTACAGAGGGTTGACTGATCTTATTTCACCTTCTTGGTTGAAGTTGTTTAATGCAAGTGAATTCAATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttctgtattccctgttgtatcatgtgtatatatgtgacaatgttgaaattgcagATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCAGCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAG
tgtatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttaccatcatttactgtagtataatgcaggttattcacttctgtattccctgttgtatcatgtgtatatatgtgacaatgttgaaattgcagATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCAGCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG