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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggatttttttatttttttacaatagtatttttgttagttctcacagggtactaacagaatgccctgtaaactaacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTACACACACTCGTCAATGATATGTTCCCTCCTACTTCTTTGGTTGAACAG

Basic information

species Glycine max
transcript GLYMA19G35930.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35930.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 3'ss of exon 8
gtgtggatttttttatttttttacaatag-tatttttgttagttctcacagggtactaac---agaatgccctgtaaact-aacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTACACACACTCGTCAATGATATGTTCCCTCCTACTTCTTTGGTTGAACAG
    | | ||    | | |||| ||     ||   |  |  | |  ||  ||    | ||   | | |  | | | ||||  ||||||||| ||||| || |||||||| |||||||  ||||| ||||| || |||||||| ||||||||||| ||||| || || ||||| ||||| ||||||
----gtacttcaccaatatttttcatggcctaccatcctgggattacaagggcattttacttgaaattttcatttgaacttgacagGGTGAAGTGGCCATTAGTCATCGGATTGATGTGAAATCCTACACCTCTTTACACACTCTCGTCAATGACATGTTTCCCCCAACTTCATTGGTAGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040669|gb|BM308963.1|BM308963
EST:     ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAG                         GGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTA
genomic: ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAGgtgtggattt ... aaactaacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTA
EST: gi|51337200|gb|CO981066.1|CO981066
EST:     ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAG                         GGTGAGGTGGCAATAAGTCATGGTATTGATGCAAAATCTTACACATCATTA
genomic: ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAGgtgtggattt ... aaactaacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTA
EST: gi|11412625|gb|BF424636.1|BF424636
EST:     ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAG                         GGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTA
genomic: ACAGGAAGATAGGAATCCCGAAGGGCAAGATATTTATTATTAATCCTAAGgtgtggattt ... aaactaacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatttttgttagttctcacagggtactaacagaatgccctgtaaactaacagGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTACACACACTCGTCAATGATATGTTCCCTCCTACTTCTTTGGTTGAACAG
                          tactaac  putative branch site (score: 0)
     tttttgtta  TA-rich tract