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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgataatgttctcacattaattacttgaactttcattttgttgatttaactttaacaagtgtgttttattttttcatttgtcaacttattatcctttttaatgttttatcttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193515777|gb|FK473353.1|FK473353
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193669033|gb|FK614055.1|FK614055
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193618949|gb|FK569363.1|FK569363
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193386273|gb|FK349451.1|FK349451
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|208154130|gb|GD956163.1|GD956163
EST:     AAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: AAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193471512|gb|FK436613.1|FK436613
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|208052506|gb|GD851341.1|GD851341
EST:     ATGCTTCCAGGAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193390214|gb|FK355448.1|FK355448
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193584136|gb|FK540284.1|FK540284
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|208058249|gb|GD860254.1|GD860254
EST:     ANGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACGTGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193703732|gb|FK640934.1|FK640934
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|193534142|gb|FK492993.1|FK492993
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAG
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAG
EST: gi|193703286|gb|FK638262.1|FK638262
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|207812392|gb|GD785306.1|GD785306
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAAC
EST: gi|208050776|gb|GD848925.1|GD848925
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTACCAAATGACATGTTTT
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCT-CCAA-TGACATGTTTT
EST: gi|193423600|gb|FK387265.1|FK387265
EST:     ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCAT                         ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTAC
genomic: ATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATgtaatgataa ... cttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttttcatttgtcaacttattatcctttttaatgttttatcttttattagACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG
                               ttttaat  putative branch site (score: 3)
                                       ttttatcttttatt  CT-rich tract
                  aacttattatcctttt  TA-rich tract