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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttatgttcaattcctttttactggatttagtttttattcataattttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcagGTCAAAAGGAATGAAAAAGTATACTGCCGTAGACAAATGGAACACACAACTTAAATCTCTTTACCAAACTATCAGCAACAGAGTTGGTTAA

Basic information

species Glycine max
transcript GLYMA19G30100.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30100.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtttttatgttcaattcctttttactggatttagtttttattcataatt-ttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcagGTCAAAAGGAATGAAAAAGTATACTGCCGTAGACAAATGGAACACACAACTTAAATCTCTTTACCAAACTATCAGCAACAGAGTTGGTTAA---------
            ||| | || | ||||  |   |||| |  ||||   |  || |||| |    || |     || |||   | |   ||||      ||| ||| || ||||||||||| |||||| | || || || |||||||||||||| |||||||| ||||| |||||||| |||||  |||| |||| |         
------------gttgagtttcatttttttt--tttattgattatctgttgttgttgtatcgttaatattatttaccttggttta---tctat-----tgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGAGAGTTGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgtttgtaaaaaacctcgtatctttactaacattctaaatgcatgttcagGTCAAAAGGAATGAAAAAGTATACTGCCGTAGACAAATGGAACACACAACTTAAATCTCTTTACCAAACTATCAGCAACAGAGTTGGTTAA
       tttgtaaaaaa  TA-rich tract