Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgtttggtgttgtttttcttttattcttaccaaatcatgaaatataacgttttgtatatgcatctttgttgtcatttttttccatcttctaatatgtatgtatatacattattatatatccgttatatattggaaatccagGAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGATTTTGCCTAAAGTTCCTGGTCGGTTCTACTATTATTTTGGAAAACCATTG

Basic information

species Glycine max
transcript GLYMA19G27200.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319092|gb|GR828820.1|GR828820
EST:     TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAG                         GAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT
genomic: TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAGgtatcttgtt ... ggaaatccagGAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT
EST: gi|209709678|gb|BW657207.1|BW657207
EST:     TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAG                         GAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT
genomic: TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAGgtatcttgtt ... ggaaatccagGAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT
EST: gi|58017660|gb|CX704402.1|CX704402
EST:     TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAG                         GAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT
genomic: TACTTTAGGTCGGAAATAGAAAGCCTCACAAATGAGGCTACGCAGTTGAGgtatcttgtt ... ggaaatccagGAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaatatgtatgtatatacattattatatatccgttatatattggaaatccagGAGTGATGCTGGTGGTGAGGTGGCAAATCAGCCAGTGCATATGCCGTTGATTTTGCCTAAAGTTCCTGGTCGGTTCTACTATTATTTTGGAAAACCATTG
 ttctaat  putative branch site (score: 2)
          tatgtatatacattat  TA-rich tract