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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtatgattattgcaagtttgatgttttgttgatataaagttcacaataaagtgactctggctttttttttgtcttgatttgttgccaacatttttatacattctcatcataaaattctctgtttttataaaaaaataaaaataaattatgtgcaGAGATATATGGATTCGGAGATACGTGCAATTATGGCTCAGTACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACAATATCTAGAAT

Basic information

species Glycine max
transcript GLYMA18G44580.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44580.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
ggtatgattattgcaagtttgatgttttgttgatataaagttcacaataaagtgactctggctttttttttgtcttgatttgttgccaacatttttatacattctcatcataaaattctctgtttttataaaaaaataaaaataaattatgtgcaGAGATATATGGATTCGGAGATACGTGCAATTATGGCTCAGTACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACA---ATATCTAGAAT
                                                       |   |     |   ||    || |  ||  |    |||  ||||       |  || ||  |   ||| || || | ||  |     |    | | |||||||||| |||||||| |||||  | ||||| ||||| ||||||||||||||||||||||||   ||| |  | ||||| ||||  ||     | || ||||  
-----------------------------------------------------tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttcctttt--gctgt-tgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctcatcataaaattctctgtttttataaaaaaataaaaataaattatgtgcaGAGATATATGGATTCGGAGATACGTGCAATTATGGCTCAGTACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACAATATCTAGAAT
         ataaaattctctgttt  TA-rich tract