1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ggtatactctattgtcctttgcctttcaataacagtactctgagcttattcatgttttagaaattctaatcatgtacagtcattgaagtagcttctactgacttttctattggctaccttctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG
species | Glycine max |
transcript | GLYMA18G43310.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCA GTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGEST: gi|15203846|gb|BI426614.1|BI426614
genomic: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCAggtatactct ... tctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGG
EST: ATAGGGCTCTAGGGCTTCA GTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGEST: gi|16276277|gb|BI941773.1|BI941773
genomic: ATAGGGCTCTAGGGCTTCAggtatactct ... tctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGG
EST: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCA GTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGEST: gi|16349016|gb|BI974611.1|BI974611
genomic: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCAggtatactct ... tctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGG
EST: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCA GTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGG
genomic: ATTGTCAATGACTTCAAAAGTGTTGAAGGGGATAGGGCTCTAGGGCTTCAggtatactct ... tctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGG
tacagtcattgaagtagcttctactgacttttctattggctaccttctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG
tactgac putative branch site (score: 1)
ctaccttcttt putative PPT
ttttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatactctattgtcctttgcctttcaataacagtactctgagcttattcatgttttagaaattctaatcatgtacagtcattgaagtagcttctactgacttttctattggctaccttctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA