Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatgtgatctgaataaactactgcttttgacctttatggactatttgagatttgctgagatcagttgctttgatttttggtgatttatcttttattttgccttgcaatgtaatttttctctatgcatgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGA

Basic information

species Glycine max
transcript GLYMA18G32830.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417464|gb|FK385018.1|FK385018
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|193412717|gb|FK376940.1|FK376940
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTG
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTG
EST: gi|208102659|gb|GD897400.1|GD897400
EST:     CTTGTAACTTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: C-TG-AAC-TTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|208261294|gb|GE058202.1|GE058202
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGA
EST: gi|193603878|gb|FK557639.1|FK557639
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTT
EST: gi|193695544|gb|FK631314.1|FK631314
EST:     GGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTT
genomic: GGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCC-TAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTT
EST: gi|193401606|gb|FK366279.1|FK366279
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGT
EST: gi|208292360|gb|GE092432.1|GE092432
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|193410122|gb|FK370831.1|FK370831
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|151413161|gb|EV282969.1|EV282969
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTG
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTG
EST: gi|193710398|gb|FK648654.1|FK648654
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACGGGACTTTGAAGGAAA-GGTGAAAG
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAG
EST: gi|58015099|gb|CX701841.1|CX701841
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|193701912|gb|FK640478.1|FK640478
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTT
EST: gi|11412552|gb|BF424563.1|BF424563
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|208147761|gb|GD947584.1|GD947584
EST:     GGCTGAACTTGACATTAAGAAAGCTCTTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAAGGAAAAAGGTGAAAGAGAATA
genomic: GGCTGAACTTGACATTAAGAAAGCTC-TTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTG-AAGG-AAAAGGTGAAAGAGAATA
EST: gi|207842778|gb|GD816002.1|GD816002
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAA-TTGGAGTACAGGACTTTGAAGGAAAAGGTAGAAAGAAGAATA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGT-GAAAGA-GAATA
EST: gi|208034492|gb|GD837188.1|GD837188
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAG
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAG
EST: gi|193355351|gb|FK319936.1|FK319936
EST:     CTTGTAACTTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: C-TG-AAC-TTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|208096910|gb|GD894647.1|GD894647
EST:     AAGAAAGCTCTTGTAGACTGACCCTAACAACAGG                         GATGTCAAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAA
genomic: AAGAAAGCTCTTG-ACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTC-AAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAA
EST: gi|193425532|gb|FK387881.1|FK387881
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|208323835|gb|GE124366.1|GE124366
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|213592147|gb|DB983303.1|DB983303
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|193305405|gb|FK273254.1|FK273254
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAA
EST: gi|208249138|gb|GE050375.1|GE050375
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCCAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAA
EST: gi|208119047|gb|GD914740.1|GD914740
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAA
EST: gi|193603805|gb|FK557608.1|FK557608
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTGCAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|208248587|gb|GE044070.1|GE044070
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAG
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAG
EST: gi|208167101|gb|GD963003.1|GD963003
EST:     TGGCTGAACTTGACATTAGGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAA
EST: gi|193327885|gb|FK296860.1|FK296860
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|31475387|gb|CD417415.1|CD417415
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
EST: gi|193583060|gb|FK539688.1|FK539688
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAA
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAA
EST: gi|9440155|gb|BE440665.1|BE440665
EST:     TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGG                         GATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT
genomic: TGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGtatgtgatct ... atgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttatcttttattttgccttgcaatgtaatttttctctatgcatgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGA
     tatcttttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgtgatctgaataaactactgcttttgacctttatggactatttgagatttgctgagatcagttgctttgatttttggtgatttatcttttattttgccttgcaatgtaatttttctctatgcatgaaccaggGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG