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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taaatgttcctcttgagattcttcctttctgaaatgacccttctccaactttttgtgtgcaactacttacactttggagttgttacaacagaGGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTATTACAGGCGCTGTCATATATGTTGACAATGGTCTAAACGCTATGGGTGTT

Basic information

species Glycine max
transcript GLYMA18G31780.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G31780.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 12
taaatgttcctcttgagattctt-----ccttt--ctgaaatgacccttctccaactttttgtgtgcaactacttacactt-------tggagttgttacaacagaGGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTATTACAGGCGCTGTCATATATGTTGACAATGGTCTAAACGCTATGGGTGTT
    ||     ||  | |  |||     |||||   | | |||  | ||     | || ||||   | || |    |  |        |  |     |  |||||| ||||| || ||||||||||| |||||| |||||||  ||||||| || || || || ||||||||||| || || || ||||| || || |||||||| 
---gtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacagATGAGGTGGGGAACACTGCTGCCTTCTTGGCATCACCTCTGGCATCTGCCATCACTGGTGCTGTCATATACGTCGATAACGGTCTGAATGCAATGGGTGT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602425|gb|BQ612756.1|BQ612756
EST:     ATTGACTATTCATTTACCAATGCACCACTGCAGAAAGAACTACATGCTGA                         GGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTAT
genomic: ATTGACTATTCATTTACCAATGCACCACTGCAGAAAGAACTACATGCTGGtaaatgttcc ... ttacaacagaGGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttctccaactttttgtgtgcaactacttacactttggagttgttacaacagaGGAGGTAGGCAACACTGCTGCTTTCTTGTCATCACCCTTGGCATCAGCTATTACAGGCGCTGTCATATATGTTGACAATGGTCTAAACGCTATGGGTGTT
                          tacttac  putative branch site (score: 1)
         aacttttt  TA-rich tract