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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttaacctttaaaataattgatattgtggaaatactagtatgtgctctgcatatatttatttattatcgtatatatttctttctctttgtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG

Basic information

species Glycine max
transcript GLYMA18G27710.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193322851|gb|FK288709.1|FK288709
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
EST: gi|193413746|gb|FK380025.1|FK380025
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
EST: gi|208259390|gb|GE053876.1|GE053876
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
EST: gi|193328046|gb|FK296895.1|FK296895
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
EST: gi|208210316|gb|GE003957.1|GE003957
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
EST: gi|120533930|gb|EH262063.1|EH262063
EST:     GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT
genomic: GGGGCCCTCACAACCACACTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacacaagt ... gtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctgcatatatttatttattatcgtatatatttctttctctttgtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG
                              tatttctttctctttg  CT-rich tract
       atatatttatttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttaacctttaaaataattgatattgtggaaatactagtatgtgctctgcatatatttatttattatcgtatatatttctttctctttgtgtatgcagGCCACAACTCCCGAATATAGAGCATATCAGGAACAAGTTCTCAGCAACAGTTTTAAATTTGCACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - aaaataa
- - - - - - - - - - - - - - - gaaatac
- - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - ctctgca