1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatacttttcttatttgccacattaattgatcaagttattcctttaataacataatttcaacagctcatctgatgatttctttctctgcttaccatctagGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGA
species | Glycine max |
transcript | GLYMA18G12730.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAG GAACATTTTCTATCCAGCEST: gi|208296322|gb|GE089618.1|GE089618
genomic: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGgtagtatgat ... taccatctagGAACATTTTCTATCCAGC
EST: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAG GAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGAEST: gi|51336464|gb|CO980330.1|CO980330
genomic: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGgtagtatgat ... taccatctagGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGA
EST: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAG GAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGA
genomic: GGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGgtagtatgat ... taccatctagGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGA
aataacataatttcaacagctcatctgatgatttctttctctgcttaccatctagGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGA
tttctttctctgctta CT-rich tract
ataatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacttttcttatttgccacattaattgatcaagttattcctttaataacataatttcaacagctcatctgatgatttctttctctgcttaccatctagGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - -tgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg