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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctgcaattcagtaactttttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTGTAGCACTTTCCATTATCCGAGCCAATCCTACTGTTTTGG

Basic information

species Glycine max
transcript GLYMA18G07280.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07280.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 11
-----------gtcctgcaattcagtaactttttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTGTAGCACTTTCCATTATCCGAGCCAATCCTACTGTTTTGG
            | ||    |  ||| |   ||| |||||| |||    ||||  |||  |   ||||  | | |  || ||||||||| |||||||||||||||||||||| ||||||| ||  | | ||||| |||||||| | ||||||||| ||  || | || || || |||||||||||||
gtcatcctgtttttcttttttctagtgaacattttcttctttctacc--atttactgcgaagtttgatcctggatttaacacaacagGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAACTACTGCTGCAATCTGCACTTGATGTAGCACTCTCTGTTGTGCGTGCTAACCCTACTGTTTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070485|gb|AW099872.1|AW099872
EST:     GTGGTGGAATTGATGAGTCTGGGGGAGCAGTTCCTTGGGGAAGGGATCAG                         GGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
genomic: GTGGTGGAATTGATGAGTCTGGGGGAGCAGTTCCTTGGGGAAGGGATCAGgtcctgcaat ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttcttcctattcaatttcttgcatatgctgattttagttggaaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTGTAGCACTTTCCATTATCCGAGCCAATCCTACTGTTTTGG
                             tgctgat  putative branch site (score: 3)
           tattcaattt  TA-rich tract