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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaaaaaggcatggttttttggttggtttgtgcttcagttttcaatctgttatatataataaaattatccttttttctcatcatttcaacacattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA

Basic information

species Glycine max
transcript GLYMA17G36950.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401778|gb|EV271591.1|EV271591
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|21677651|gb|BQ630002.1|BQ630002
EST:     TGGAATTAATGGTGTTCNNNNNNNATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: TGGAATTAATGGTGTTCTTTTTT-ATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|4396935|gb|AI495932.1|AI495932
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|19268732|gb|BM884988.1|BM884988
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTTGGAGTTG
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTT-GGAGTTG
EST: gi|4283382|gb|AI440649.1|AI440649
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAAC
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttatatataataaaattatccttttttctcatcatttcaacacattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
     tatatataataaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggaaaaaggcatggttttttggttggtttgtgcttcagttttcaatctgttatatataataaaattatccttttttctcatcatttcaacacattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
-gaaaaag
- - - - gcatggt
- - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa