1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
agtgagttcctccatatcttatttttggttttattttgtatgctttcagtgtcaattatggtttttgagctgttggattcttgttctttccttttggcccatagagataagcagagattagcattttgcttatctgttaagatactatcatctgttgctatttgctaagatgcaattgttttgtgtacttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAAGAGTTTCCTTGGTACTGTGTGGAATGGATTTATATATATTCTGCAGCAC
species | Glycine max |
transcript | GLYMA17G36310.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTATTGGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACA ATGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAAEST: gi|18041079|gb|BM309373.1|BM309373
genomic: TTTATTGGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACAagtgagttcc ... ttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAA
EST: GGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACA ATGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAAEST: gi|11273794|gb|BF324189.1|BF324189
genomic: GGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACAagtgagttcc ... ttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAA
EST: TTTATTGGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACA ATGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAA
genomic: TTTATTGGTGGCATTATATATTTTGTATTAGTCTTTTCAATGTTTCCACAagtgagttcc ... ttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAA
actatcatctgttgctatttgctaagatgcaattgttttgtgtacttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAAGAGTTTCCTTGGTACTGTGTGGAATGGATTTATATATATTCTGCAGCAC
tttct CT-rich tract
aattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgagttcctccatatcttatttttggttttattttgtatgctttcagtgtcaattatggtttttgagctgttggattcttgttctttccttttggcccatagagataagcagagattagcattttgcttatctgttaagatactatcatctgttgctatttgctaagatgcaattgttttgtgtacttggtttctaGTGTGAGCTGAATCACATCCTCCAAGATGATACATTTTCTGGTCACATAAAGAGTTTCCTTGGTACTGTGTGGAATGGATTTATATATATTCTGCAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG