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...ataaggttataaatagtgaaccaattgcgctgttctactcccttgtattttctctttatagttgataatattttttgttctatcctaaaaaacactgcagTGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGATGATGGGCATCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGT
species | Glycine max |
transcript | GLYMA17G32180.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAG TGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGATEST: gi|7326418|gb|AW620227.1|AW620227
genomic: TCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAGgttagttctc ... aacactgcagTGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGAT
EST: ACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAG TGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGAT
genomic: ACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAGgttagttctc ... aacactgcagTGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGAT
tattttctctttatagttgataatattttttgttctatcctaaaaaacactgcagTGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGATGATGGGCATCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGT
tcctaaa putative branch site (score: 2)
tttatagttgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaggttataaatagtgaaccaattgcgctgttctactcccttgtattttctctttatagttgataatattttttgttctatcctaaaaaacactgcagTGTATCTTTGAAGACCTATGGCTACGATGATACGTCATTGGGATCATGGATGATGGGCATCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - agtgaac
- - - - - - - - - - -caattgc
- - - - - - - - - - - - - - gctgttc