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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttgtcttctgtggtgatgcaagtgtaatgcttatttgtttcccagtcttattttacatattacttacctgatgtggatgtagGGCTTTCTTCCACCATGAATGTACGAATAGTATATATGGACATTATGAGGCCATTTGCTGAATCAGTTTTGAGTGG

Basic information

species Glycine max
transcript GLYMA17G24420.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G24420.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G140917_T01 (Zea mays), 3'ss of exon 13
gtctgt-tgtcttctgtggtgatgcaagtgtaatgcttattt-gtttcccagtcttattttacatattacttacctgatgtgga-tgtagGGCTTTCTTCCACCATGAATGTACGAATAGTATATATGGACATTATGAGGCCATTTGCTGAATCAGTTTTGAGTGG
|| ||| | |  | || | | |  |     |      |||   || ||  | |   ||||      ||| ||   | |       || ||| |||||  |  |  | |||||  | ||||| ||| ||||||| |||||||||||||||||||||  ||||   ||
gtatgtgtttgatttgggcttactcgttcctctcaggtatccagtgtcttaatgacatttatttatttatttttttaaaaaatcctgcagGTCTTTCAGCTTCACTAAATGTTAGGATAGTTTATCTGGACATCATGAGGCCATTTGCTGAATCAACTTTGTTAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttatttgtttcccagtcttattttacatattacttacctgatgtggatgtagGGCTTTCTTCCACCATGAATGTACGAATAGTATATATGGACATTATGAGGCCATTTGCTGAATCAGTTTTGAGTGG
                  tcttattttacatatt  TA-rich tract