1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttctatttctaatataataaacatttttctaataaaaactttttacttttacataaccaatgtcacatcacatgccaactccttttggtttttaatagGTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAGAGGGACTATTTACATGCTTCAGTTGGCATTACTAAAACAAACAAGTTAA
species | Glycine max |
transcript | GLYMA17G20320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCCCTTAGTAACATTTGCACTTTCCTGTGGAAGCTGGTCTTCACCTGCA GTGAGAGTTTATACAGCATCAAAAGTTGATGAAGNGTTAGAAGCAGCAAAGEST: gi|6071779|gb|AW101166.1|AW101166
genomic: AGCCCTTAGTAACATTTGCACTTTCCTGTGGAAGCTGGTCTTCACCTGCAgtatgttttt ... tttttaatagGTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAG
EST: TCTTCACCTGCA GTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAG
genomic: TCTTCACCTGCAgtatgttttt ... tttttaatagGTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAG
tacttttacataaccaatgtcacatcacatgccaactccttttggtttttaatagGTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAGAGGGACTATTTACATGCTTCAGTTGGCATTACTAAAACAAACAAGTTAA
acataac putative branch site (score: 3)
ctccttttggttttt putative PPT
ttttggtttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctatttctaatataataaacatttttctaataaaaactttttacttttacataaccaatgtcacatcacatgccaactccttttggtttttaatagGTGAGAGTTTATACAGCATCAAAAGTTGATGAAGAGTTAGAAGCAGCAAAGAGGGACTATTTACATGCTTCAGTTGGCATTACTAAAACAAACAAGTTAA
- - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttg