1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtatttatagtgatagaataagaaggaaataacctgttaatttatgctgctactttttattcctttaattttaaattctttctgtgcctgtttatgatagTCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGGGGACTTAGTGTTGGACTTGGAATCAATTACTCTTGTGCAGAACAGTGGA
species | Glycine max |
transcript | GLYMA17G13650.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCAACCTTTCTCAGAGGAATCTTCAATTNNNNNNNTTGCTGTTCAG TCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGGEST: gi|17963772|gb|BM270517.1|BM270517
genomic: TGCTGCAACCTTTCTCAGAGGAATCTTCAATTAAAAAAATTGCTGTTCAGgtatgttata ... tttatgatagTCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGG
EST: TGCTGCAACCTTTCTCAGAGGAATCTTCAATTNNNNNNNTTGCTGTTCAG TCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGG
genomic: TGCTGCAACCTTTCTCAGAGGAATCTTCAATTAAAAAAATTGCTGTTCAGgtatgttata ... tttatgatagTCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGG
gctgctactttttattcctttaattttaaattctttctgtgcctgtttatgatagTCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGGGGACTTAGTGTTGGACTTGGAATCAATTACTCTTGTGCAGAACAGTGGA
ctttaat putative branch site (score: 4)
cctgttt putative PPT
tactttttattccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatagtgatagaataagaaggaaataacctgttaatttatgctgctactttttattcctttaattttaaattctttctgtgcctgtttatgatagTCTTTTCCAGAAGAACTGTTTTCTGTACTTCGGACAGTGCATCTACTGAGGGGACTTAGTGTTGGACTTGGAATCAATTACTCTTGTGCAGAACAGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - aataagaa
- - - - - - - - - - - - ggaaataa
- - - - - - - - - - - - - - - - cctgtta
- - - - - - - - - - - - - - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgc