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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagtttaatcttcaatgttgtattaactgaagcatcttattcttgacgggttttgcttgtcaatataatgtggatctgatcatttttttcaatatgcagTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTCTTGTGGATGTCCTGTTTTAAG

Basic information

species Glycine max
transcript GLYMA17G13080.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 11
gtagtttaatcttcaatgttgtattaactgaagcatcttattcttgacgggttttgcttgtcaatataatgtggatctgatcatttt---tttcaatatgcagTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTCTTGTGGATGTCCTGTTTTAAG
 | || || |  ||   ||   || ||| ||      ||   |||||    |     |      ||  || ||  | |    | |||   |||  | |||||||| || || |||||||| ||| |||| |||||||| || |||||||||||||| || ||||  || |||||||  |||| ||| ||||| ||  ||||
-ttgtatatttctcttcgt--gatcaaccgattatctttcagcttgaattttcgaagtcagttctaatatctgtgtttctcaaatttcacttttgagatgcagTTCCGGCAATTTGCTAATAAGATTGGAAATCTTGAGCGTCCATTTCTTAAAGAATTTTTTCAGCGATGGGTTGCATCTTATGGTTGTCCCGTGCTAAG

upper sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 11
--gtagtttaatcttcaatgttgtattaactgaagcatcttattcttgacgggttttgcttgtcaatataatgtggatctgatcatttttttcaatatgcagTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTCTTGTGGATGTCCTGTTTTAAG
   | || |||| || |||     ||  | |  |  ||  | ||         | ||  || |   ||     |     | || | |  | | ||| ||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| || |||||||| ||||| || |||||||| ||||||||  ||||
ttttggtgtaat-ttgaatacatcat-gattttattattgtgttagaagaatatgtttattttatttacttatttaccttaattaatcctataaatgtgcagTTCCGACATTTTGCCAATAAGGTTGGAAATCTTGAGCGCCCATTTCTTAAAGAATTTTTTCCTCGCTGGGTAGGATCTTGTGGGTGTCCTGTACTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacgggttttgcttgtcaatataatgtggatctgatcatttttttcaatatgcagTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTCTTGTGGATGTCCTGTTTTAAG
                                   tcatttttttc  CT-rich tract
                                  atcatttttttcaata  TA-rich tract