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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcagttacccttcgctaattattggagcacgatgataaactgctattttaatattaaaccaaataccttgtctatttcagGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGA

Basic information

species Glycine max
transcript GLYMA17G08660.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208327008|gb|GE123756.1|GE123756
EST:     TGCTCTGCTTGATGATCTAGATAACCTTAAATCACAA                         GAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: TGCTCTGC-TGATGATCTAGATAACCTTAAATCACAAgtaacatcag ... tctatttcagGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|31310108|gb|CD395311.1|CD395311
EST:     AGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAA                         GAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAgtaacatcag ... tctatttcagGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcacgatgataaactgctattttaatattaaaccaaataccttgtctatttcagGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGA
                    ttttaat  putative branch site (score: 3)
                                        ccttgtct  putative PPT
      atgataaactgctatt  TA-rich tract