Sequence
atgc intronic sequence ATGC exonic sequence...gtcttggtctccattgtttctttatattgccattatttacattgtgaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
Basic information
species | Glycine max |
transcript | GLYMA17G07480.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07480.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 3'ss of exon 13
---gtcttggtctccattgtttctttatattgccattatttacattgtgaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
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tcagtttagataaacagctactttgcaaattacaactccagatggcattcgacactgatatcctcaa-aattatttaagc--gacgctacctactgttttcagGCAGCAGCAATACGATTGGAGATCAAAGGTGGGCAATGGAGGGATGCATACATGCAAATGGATGGGGAGCCATGGAAGCAACCATTGGACCACGAGTACT
upper sequence: GLYMA17G07480.1 (Glycine max), 3'ss of exon 11
lower sequence: AT4G30340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcttggtctccattgtttctttatattgccattatttacattgtgaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
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-------------gtacaacaaaatacatccaaagttt-ctttataagaatcggtttaacct------cggtttgatattaaaccgtttat-cgttttagGCGGCTGCGATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCATTCTTGCAAATGGATGGTGAACCATGGAAACAACCGATGAAGAGTGATTATT
upper sequence: GLYMA17G07480.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 3'ss of exon 11
gtcttg---gtctccattgtttctttat-attgccattatttacattgtgaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
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gatttaagtgtttccatcatagtgttattgatgctgatgtt-ggattctgaaa-tctatgctttt--ataattccattgaataagttttatgggtatctttcagGCTGCAGCAATCCGATTGGAAATCAGAGGTGGAGAGTGGAAGCAAGCATATATGCAGATGGATGGGGAGCCATGGAAACAGCCAATAAACAATGAGTTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254319478|gb|GR830729.1|GR830729EST: ATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAG GCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATAT
genomic: ATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagt ... tatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
tatctttc CT-rich tract
tttctatttatatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttggtctccattgtttctttatattgccattatttacattgtgaaaatttgtctttctcaatgaccagccccactggtttctatttatatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - ctccatt
- - - - - - - - - - - - tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actggtt