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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacataagaatacattcacatatactgaggcaacaaaagccaaacgcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGA

Basic information

species Glycine max
transcript GLYMA17G07320.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07320.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacacataagaatacattcacatatactgaggcaacaaaagccaaacgcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGA
|| |   |    |  |||    || | || |   ||||||    || |  |      |  |  | |||    |    ||| | |    || ||||||||||||||||| ||||| ||||| |||||| | |||||||| || || || || || ||||| ||||| |||||||| ||||| ||  | |||||||
gttc-tgttgttactcatctg-atct-ctcatataacaaagagtaagcttatatgtttctcataaatt----ttgtctttctttttccttccagATTGGTGATTTGGGGTTATCGAAGGTGAAACAGAAGACTCTAGTATCAGGAGGTGTTCGTGGGACTTTGCCATGGATGGCACCTGAGCTCTTGAGTGGGA

upper sequence: GLYMA17G07320.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 5
gtacacataagaatacatt-cacatatact-gaggcaacaaaagccaaacgcaacctgctagcggagattgaaat--gagatttgtgta------atttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGA
      |  ||| ||  || || || |||| |  | | | ||    || |  |   |  ||   | ||||| | |  |    || |  |      || ||  |||||||||| |||||||||||||||||||||||||| ||  |||| || || || || || || ||  | ||||||||||| || || |||||||||||||
---tttagcagattatgttgcatatttacttgctgtacctaatagtaatcata-tatattaaatgggattggatttgggagcttatccatttcatatcttgtagATTGGTGACTTGGGTTTATCAAAGGTTAAACAGCATACGTTAGTATCAGGAGGTGTTCGTGGAACACTTCCTTGGATGGCACCAGAGCTTCTTAGTGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagccaaacgcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGA
                                               tttttc  CT-rich tract
                                     atttgtgtaattttt  TA-rich tract