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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccatgtttccttaatcttttttttttgggaggaggggcctgatgagagagatattcaagactttttagttattaacatgacacatttttatttgacagGGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACACTGACCCTTTTTGC

Basic information

species Glycine max
transcript GLYMA17G04070.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193497704|gb|FK461650.1|FK461650
EST:     AAGGTCACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAAC                         GGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACA
genomic: AAGGTCACATACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccat ... tatttgacagGGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACA
EST: gi|15287200|gb|BI471091.1|BI471091
EST:     ACAATAAATACCATCCTTATACCTCATGGATTCCCATAAC                         GGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACACT
genomic: ACAATAAATACCATCCTTATACCTCATGGATTCCCATAACgtatgtccat ... tatttgacagGGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagagagatattcaagactttttagttattaacatgacacatttttatttgacagGGTTTACATATGCTTGCGGAATGTTACCCAAAGTTTTCGTAGCTATACACTGACCCTTTTTGC
                          tattaac  putative branch site (score: 1)
                                         tttttattt  putative PPT
                  tttttagttattaaca  TA-rich tract