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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgctctttttatgcctttaattgctgtttgatttcatcttcattacgatttttaccttcccttctcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAACTCGATAATACATTCTAACAATGCCTAT

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207748986|gb|GD719535.1|GD719535
EST:     CCGTTGTGTTGTCAAAGATACATCAGACATATAGNGTTGGTTTTTTGAAG                         GATGTTGTTCTGGCG
genomic: CCGTTGTGTTGTCAAAGATACATCAGACATATAGAGTTGGTTTTTTGAAGgttttgctct ... tcactttcagGATGTTGTTCTGGCG
EST: gi|193637486|gb|FK584915.1|FK584915
EST:     TATAGAGTTGGTTTTTTGAAG                         GATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAAC
genomic: TATAGAGTTGGTTTTTTGAAGgttttgctct ... tcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctgtttgatttcatcttcattacgatttttaccttcccttctcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAACTCGATAATACATTCTAACAATGCCTAT
                                          ttctcac  putative branch site (score: 2)
                          cgatttttaccttccc  CT-rich tract
                            attttta  TA-rich tract