1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttgacaaattagaaacattttcccttttttcttttgaattttcatttttctcagttgagatatatttctttgtcagatgctttaactagataactgactaccttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACAAATCATATGTGACAGATTATCCAATTGTGTCCATTGAGGATCCATTTG
species | Glycine max |
transcript | GLYMA16G32960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAG-AGACAGCTTAA-GAATGTGTACEST: gi|16996761|gb|BM086133.1|BM086133
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|58014968|gb|CX701710.1|CX701710
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: ATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|24135559|gb|BU926069.1|BU926069
genomic: ATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|57574275|gb|CX547250.1|CX547250
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: CGATAACAGGGATAAAACCTATGAC-TGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|58021375|gb|CX708116.1|CX708116
genomic: CGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|16343634|gb|BI969229.1|BI969229
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: ATTTTANGGAAGAG AATAATGATGGATNNNAGNNNANCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|254329397|gb|GR838950.1|GR838950
genomic: ATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AAACCTATGAC-TGAATTTTAAGGAAGAG AATAATGATGGATCCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAEST: gi|58020394|gb|CX707136.1|CX707136
genomic: AAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGAT-CACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTA
EST: GATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|151408704|gb|EV278512.1|EV278512
genomic: GATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|15812359|gb|BI784634.1|BI784634
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACEST: gi|254329396|gb|GR838949.1|GR838949
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
EST: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAG AATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
genomic: AATTTTACGATAACAAGGATAAAACCTATGACTTGAATTTTAAGGAAGAGgttgacaaat ... cttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTAC
gagatatatttctttgtcagatgctttaactagataactgactaccttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACAAATCATATGTGACAGATTATCCAATTGTGTCCATTGAGGATCCATTTG
aactgac putative branch site (score: 2)
ctacctt CT-rich tract
atatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgacaaattagaaacattttcccttttttcttttgaattttcatttttctcagttgagatatatttctttgtcagatgctttaactagataactgactaccttattgcagAATAATGATGGATCACAGAAAATCTCAGGAGACAGCTTAAAGAATGTGTACAAATCATATGTGACAGATTATCCAATTGTGTCCATTGAGGATCCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT