1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acacaaacatcaaaagggttttggtagttgctgatgtatattgtttttccttaccagagtgttgttgatttgtataaccttgcactttcatccattccagGTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTGGAACCTACAACGGTGGACTTTTGTCTACGGAGGCAGGGACACTTGCTAG
species | Glycine max |
transcript | GLYMA16G29440.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATACATCTGTTCGGGTCTCCTTTTATTTGTTTCTGCCGAAGTACTTGAAG GTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTGEST: gi|31465790|gb|CD407818.1|CD407818
genomic: ATACATCTGTTCGGGTCTCCTTTTATTTGTTTCTGCCGAAGTACTTGAAGgtaagatctt ... tccattccagGTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTG
EST: CGAAGTACTTGAAG GTGTCAACTGGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTG
genomic: CGAAGTACTTGAAGgtaagatctt ... tccattccagGTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTG
tttccttaccagagtgttgttgatttgtataaccttgcactttcatccattccagGTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTGGAACCTACAACGGTGGACTTTTGTCTACGGAGGCAGGGACACTTGCTAG
ctttcatccattcc CT-rich tract
atttgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacaaacatcaaaagggttttggtagttgctgatgtatattgtttttccttaccagagtgttgttgatttgtataaccttgcactttcatccattccagGTGTCAACTTGTCACTGCTTTCGCGAGTAATGTCATCGAGGCTTTCTCGTGGAACCTACAACGGTGGACTTTTGTCTACGGAGGCAGGGACACTTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-cacaaac
- - - - - - - - ggttttg
- - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgca