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gtaagtacactgcctggatatttctgccttttttctgaaagttctctccatttttttaaatatatttggcttgagttttttttttcttttttcttttttctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAAA
species | Glycine max |
transcript | GLYMA16G27970.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGAACAAATGAAAGGTGTACAGGTCTTGTTGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTEST: gi|61241638|gb|DN591029.1|DN591029
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTEST: gi|192326435|gb|FK017707.1|FK017707
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTTCATTTATGGGAACATTEST: gi|193348643|gb|FK317733.1|FK317733
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTEST: gi|17023569|gb|BM094603.1|BM094603
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTEST: gi|14989899|gb|BI315589.1|BI315589
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: TGCAAATCTCAATCCTGAT AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: TGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
tttaaatatatttggcttgagttttttttttcttttttcttttttctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAAA
cttgagtttttttttt CT-rich tract
ttgagttttttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacactgcctggatatttctgccttttttctgaaagttctctccatttttttaaatatatttggcttgagttttttttttcttttttcttttttctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA