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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttaagttggacaaatttgtggggttatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG

Basic information

species Glycine max
transcript GLYMA16G25750.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25750.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 3'ss of exon 15
-----------------------------------------------------------------------------------------------------------------gtgttaagttggaca--aatttgtggggttatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG
                                                                                                                  ||  ||| | || |  |||      |  | ||||||||||| | |||||||| |  || |||||||| || || ||||| || |||||| |||||||||| |||||||||||   | |  || ||||  |  | | 
gtacttatccgttcagtgacaaatattgcgttgacaattgtttctattcaagccctctgaaatgtgattaatctatgttcttcaaatgttgcacttcctgttttccattcataatgagaagctagaaattaataaccaagtgtttggcagGCTATCGAAATCTGAGACAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGAATCAGAGATACATTCAAGCTCTGGTAACAATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttaagttggacaaatttgtggggttatggcagGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGG
                                                                       acaaattt  TA-rich tract