1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatacaatcataaaatatagtgttcttccttcatgaaatatagtattttcaattcgttcactgaatgctgcctaattgttatatatattaaccctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG
species | Glycine max |
transcript | GLYMA16G24270.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCEST: gi|6227846|gb|AW156445.1|AW156445
genomic: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
EST: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCEST: gi|6718797|gb|AW306444.1|AW306444
genomic: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
EST: GTCCAAACAAACTTCATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCEST: gi|9984582|gb|BE658690.1|BE658690
genomic: GTCCAAACAAACTTCATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
EST: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCEST: gi|193700940|gb|FK639951.1|FK639951
genomic: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
EST: CGTCCAAACAAACTTCTATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCEST: gi|192303245|gb|FG995581.1|FG995581
genomic: CGTCCAAACAAACTTC-ATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
EST: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
genomic: CTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttacc ... accctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTC
ttttcaattcgttcactgaatgctgcctaattgttatatatattaaccctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG
tattaac putative branch site (score: 1)
ccctttc CT-rich tract
taattgttatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatacaatcataaaatatagtgttcttccttcatgaaatatagtattttcaattcgttcactgaatgctgcctaattgttatatatattaaccctttcagTGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -ataaaata
- - - - - - - - - - - ttcttcc
- - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - cgttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct