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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacatggtttgagtggtatacattaaccagacttttttatttggatagttaagttgcatcttgtatcattatcagcatccataacttttaagttctatgtatgtattcagGATGAGTTGAAATTAAGCAGTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCC

Basic information

species Glycine max
transcript GLYMA16G23840.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 10
gtactacatggtttgagtggtatacattaaccagacttttttatttggatagttaagttgcatcttgtatcattatcagcatccataacttttaagttcta-tgtatgtattcagGATGAGTTGAAATTAAGCAGTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCC
        | | |||     |||| |   |  | |||  |   |||||  | ||    ||||| || ||     |||    |   | |||| ||| || |  ||| | |  | |||||||  | | | |||||||| |  | |  || ||| ||||||| ||||||||||||||||| ||||| ||||| ||||| |||||  |||  ||||| |
-------ttaggttgt-caatataaaactagaaaactagtagctttggtgaatt--tctgcat-ttataatgccatc----ttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcttgtatcattatcagcatccataacttttaagttctatgtatgtattcagGATGAGTTGAAATTAAGCAGTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCC
                       ccataac  putative branch site (score: 3)
                         ataacttttaagtt  TA-rich tract