1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatgtatcgatttttttttttttaataatcttgtctcaacttgattgtctgttacaagatagtttgtgccactcaagactgattgttctcttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGATTACTCTGATATGGATTTTCTT
species | Glycine max |
transcript | GLYMA16G19540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGT TTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGEST: gi|10845404|gb|BF068541.1|BF068541
genomic: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGTgtgagttatc ... ttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAG
EST: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTANCAGT TTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAAGCA-TTCCCG-CEST: gi|18724477|gb|BM523565.1|BM523565
genomic: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGTgtgagttatc ... ttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAA-GCAATTCC-GTC
EST: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGT TTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGEST: gi|6964492|gb|AW433185.1|AW433185
genomic: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGTgtgagttatc ... ttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAG
EST: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTATCAGT TTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAG
genomic: CTCCATTTGGTGTGGATACTGCATGGTTTGGTGGAAAGATTATTAGCAGTgtgagttatc ... ttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAG
tgtctgttacaagatagtttgtgccactcaagactgattgttctcttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGATTACTCTGATATGGATTTTCTT
gactgat putative branch site (score: 3)
ttgttctctt CT-rich tract
atagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtatcgatttttttttttttaataatcttgtctcaacttgattgtctgttacaagatagtttgtgccactcaagactgattgttctcttatgtacagTTGAGCACCTTTCCTGGCCCGTGGTGTACAACGAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGATTACTCTGATATGGATTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - gtctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccact