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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgaagtagacaattgatgtttccactacgtattgcttttaataagggttgcaatctttacaatatttctctgatccctatcatattactttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGTGAATGCAAGCTTGATATCAAAAACTGCTCACCTAATCAACTCAGTGTAA

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019735|gb|CX706477.1|CX706477
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCTTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|9440072|gb|BE440583.1|BE440583
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCATGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|22541803|gb|BU091646.1|BU091646
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|15814583|gb|BI786858.1|BI786858
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|8669044|gb|BE190146.1|BE190146
EST:     AATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|151403120|gb|EV272930.1|EV272930
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCGAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14011349|gb|BG726271.1|BG726271
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGGTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14009092|gb|BG725696.1|BG725696
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTG
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTG
EST: gi|15814521|gb|BI786796.1|BI786796
EST:     GCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: GCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|58022806|gb|CX709547.1|CX709547
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCNTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|31467378|gb|CD409406.1|CD409406
EST:     CAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: CAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggttgcaatctttacaatatttctctgatccctatcatattactttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGTGAATGCAAGCTTGATATCAAAAACTGCTCACCTAATCAACTCAGTGTAA
                                         ttacttt  CT-rich tract
        aatctttacaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgaagtagacaattgatgtttccactacgtattgcttttaataagggttgcaatctttacaatatttctctgatccctatcatattactttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGTGAATGCAAGCTTGATATCAAAAACTGCTCACCTAATCAACTCAGTGTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT