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...tctatgctgcatttttcatgtttgacttgtagcatgtgttcaggttttaaatgattacagaataagttattaaataaattattacaatttcaaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGACACCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACCT
species | Glycine max |
transcript | GLYMA16G09360.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAG GATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGEST: gi|193457605|gb|FK422433.1|FK422433
genomic: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGgtattgaaat ... caaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
EST: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAG-TTTAAG GATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGEST: gi|207780257|gb|GD752626.1|GD752626
genomic: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGgtattgaaat ... caaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
EST: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAG GATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGEST: gi|208337157|gb|GE134805.1|GE134805
genomic: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGgtattgaaat ... caaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
EST: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAG GATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGEST: gi|193530747|gb|FK485406.1|FK485406
genomic: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGgtattgaaat ... caaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
EST: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAG GATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
genomic: ACAGCAAGGTTAGCAGCTCCAGAAGCCAAAGCCGCATGGACAGTTTTAAGgtattgaaat ... caaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTG
tttaaatgattacagaataagttattaaataaattattacaatttcaaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGACACCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACCT
agaataagttattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatgctgcatttttcatgtttgacttgtagcatgtgttcaggttttaaatgattacagaataagttattaaataaattattacaatttcaaatttcagGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGACACCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
tctatgc
- - - -tgcattt
- - - - - - - -tcatgtt
- - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa