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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccttttctcagggttaacaatggtgtggctcctagCCACATGCACTCTTATTTCACTTTTCTCAATGTGGAACTTGACAAGGATAGAAGTTCTACTTTGTAACATATTGTCCCCAGAGGCACCTCGACTTTCTCT

Basic information

species Glycine max
transcript GLYMA16G08510.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08510.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 11
------------------------------------------------------------------------------------gtttgccttttctcagggttaacaatggtgtggctcctagCCACATGCACTCTTATTTCACTTTTCTCAATGTGGAACTTGACAAGGATAGAAGTTCTACTTTGTAACATATTGTCCCCAGAGGCACCTCGACTTTCTCT
                                                                                       |   ||   ||||||||     ||||  |   ||| || | ||||||| || |   |||| | ||||||||||||||||||||||||||||||| ||| || ||||| || ||                        
aatatgtatgcattaggaaagcacaagctagagaagtcaactgttgatcttatgcaataacatttttgttcttacagttttataaacttatttcaatcagGGTTGTTGCTGGTTAGCTCCCTTGCTATATGCACTATTGTAGAACTTCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATC------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgccttttctcagggttaacaatggtgtggctcctagCCACATGCACTCTTATTTCACTTTTCTCAATGTGGAACTTGACAAGGATAGAAGTTCTACTTTGTAACATATTGTCCCCAGAGGCACCTCGACTTTCTCT
                               ggttaac  putative branch site (score: 3)
                                                ctcct  putative PPT
                                 ttaacaat  TA-rich tract