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gtcagatgaaatgttgaacatttccttcctaaaagaaataaatactgaagcttcctttaatttctttggtgcaaaaattaggaaaatacagtagttcatattcattctggtgcctaaaagaagtatatatatattttttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGAGATAAGGGTTCAATTCAAGGATGTCCCTGGTGATATTTTCAAGT
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|15815763|gb|BI788038.1|BI788038
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|7925329|gb|AW831416.1|AW831416
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|16343150|gb|BI968745.1|BI968745
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: ATTTGCAACTGTTGTTCTGCGAATANNNAATGAAAGATGGGAAG GTGTTCCNNNCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|58023690|gb|CX710431.1|CX710431
genomic: ATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|37995859|gb|CF807448.1|CF807448
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|16346631|gb|BI972226.1|BI972226
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|37995462|gb|CF807051.1|CF807051
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|192310376|gb|FK002256.1|FK002256
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|16346044|gb|BI971639.1|BI971639
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: GTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|15661712|gb|BI699083.1|BI699083
genomic: GTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|58020056|gb|CX706798.1|CX706798
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|151395248|gb|EV265119.1|EV265119
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCAACATTTTGCAACTGTTGTTCCGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|37994622|gb|CF806296.1|CF806296
genomic: CCAACA-TTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGEST: gi|17519559|gb|BM188601.1|BM188601
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
EST: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAG GTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
genomic: CCCAACATTTGCAACTGTTGTTCTGCGAATACACAATGAAAGATGGGAAGgtcagatgaa ... tttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAG
tagttcatattcattctggtgcctaaaagaagtatatatatattttttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGAGATAAGGGTTCAATTCAAGGATGTCCCTGGTGATATTTTCAAGT
gcctaaa putative branch site (score: 3)
tatttttt putative PPT
taaaagaagtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagatgaaatgttgaacatttccttcctaaaagaaataaatactgaagcttcctttaatttctttggtgcaaaaattaggaaaatacagtagttcatattcattctggtgcctaaaagaagtatatatatattttttgtatcagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGAGATAAGGGTTCAATTCAAGGATGTCCCTGGTGATATTTTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG