1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgcatgaatatctccatctttgaatttcattttcccatgatctgtggatgccttggacatggatttaccataacacatcatatcacattggtcttttcagGTAGTTTTTGATTATGACGACTTGGTGAAAATTCCTTACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGGTATCTTGTTTGGT
species | Glycine max |
transcript | GLYMA16G05580.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCCAAAATAGTACCTTTTGGTGTAGTTGGAGAAGATGACATTGGTCAA GTAGTTTTTGATTATGACGACTTGGTGAAAATTCCTEST: gi|254346772|gb|GR856494.1|GR856494
genomic: GAGCCAAAATAGTACCTTTTGGTGTAGTTGGAGAAGATGACATTGGTCAAgtaagttttg ... gtcttttcagGTAGTTTTTGATTATGACGACTTGGTGAAAATTCCT
EST: AGCCAAAATAGTACCTTTTGGTGTAGTTGGAGAAGATGACATTGGGTCAA GTAGTTTTTGATTATGACGACTTG-TGAAA-TTCCTTTACTTTAG-TCTG
genomic: AGCCAAAATAGTACCTTTTGGTGTAGTTGGAGAAGATGACATTGG-TCAAgtaagttttg ... gtcttttcagGTAGTTTTTGATTATGACGACTTGGTGAAAATTCCTT-ACTTTAGGTCTG
ggatgccttggacatggatttaccataacacatcatatcacattggtcttttcagGTAGTTTTTGATTATGACGACTTGGTGAAAATTCCTTACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGGTATCTTGTTTGGT
ccataac putative branch site (score: 3)
tcttttc putative PPT
atcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgaatatctccatctttgaatttcattttcccatgatctgtggatgccttggacatggatttaccataacacatcatatcacattggtcttttcagGTAGTTTTTGATTATGACGACTTGGTGAAAATTCCTTACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGGTATCTTGTTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA