1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacttaaacgtggagttcctcaaaatttcatatccaaacacacccaggctatttatttgttgcacttcaactctgaccattgctatcatgttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCTGCAACTGATCTTT
species | Glycine max |
transcript | GLYMA16G01230.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTEST: gi|26058275|gb|CA801189.1|CA801189
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTEST: gi|7232627|gb|AW567982.1|AW567982
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTEST: gi|7233734|gb|AW569078.1|AW569078
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTEST: gi|6951590|gb|AW423658.1|AW423658
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTGGGGGAGCAAGCTCACTCCAGCCEST: gi|151400635|gb|EV270449.1|EV270449
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCC
EST: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAG TGCTCTTAGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
genomic: CCATTCAGATGGGAAATGCCCAGTCTCTTCTCTGTGGAAAACAAATTAAGgtgtggattt ... ttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTT
aggctatttatttgttgcacttcaactctgaccattgctatcatgttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCTGCAACTGATCTTT
ctctgac putative branch site (score: 3)
tatcatgttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacttaaacgtggagttcctcaaaatttcatatccaaacacacccaggctatttatttgttgcacttcaactctgaccattgctatcatgttaaatacagTGCTCTTGGGGGAGCAAGCCCACTCCAGCCGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTTTGCCTGGCCTCTCTGCAACTGATCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - -gtggagt
- - - - - - - - -cctcaaa
- - - - - - - - - - - - - - - - - - -acacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattgc