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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctgacagctaaaaaaattgttttaattttcttttagtttatttgtttatttatggttgtaattctttctttttctttttctttttcttttccttttcttaaaagaatgctaatatttttttggcggttattaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCTGTTGTGGCCAAGCCCTCTGCCTATCTCAACAAGACTATTAAGCTGAAAA

Basic information

species Glycine max
transcript GLYMA16G00210.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020252|gb|CX706994.1|CX706994
EST:     TTGTTGAANNNNNNNAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAG                         GTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT
EST: gi|9820564|gb|BE556074.1|BE556074
EST:     TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAG                         GTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTG
genomic: TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTG
EST: gi|58019887|gb|CX706629.1|CX706629
EST:     TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAG                         GTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT
EST: gi|58020109|gb|CX706851.1|CX706851
EST:     TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAG                         GTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT
genomic: TTGTTGAACACACACAGATATTGAAAACTAGGTCCAAGTGCTTGAAAGAGgtaatttctg ... attaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttccttttcttaaaagaatgctaatatttttttggcggttattaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCTGTTGTGGCCAAGCCCTCTGCCTATCTCAACAAGACTATTAAGCTGAAAA
                       tgctaat  putative branch site (score: 2)
                                              ttaccct  putative PPT
         ttttcttaaaagaatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttctgacagctaaaaaaattgttttaattttcttttagtttatttgtttatttatggttgtaattctttctttttctttttctttttcttttccttttcttaaaagaatgctaatatttttttggcggttattaccctagGTTCTTCAAAAAAGTGGGTGGGATGTGCTTGAATCGTGTGCGGGTGTGTCTGTTGTGGCCAAGCCCTCTGCCTATCTCAACAAGACTATTAAGCTGAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA