1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtattttgtttacccttgtttttatgaagtactctctagtttatgattagtatgagtaccgaacttccttgaatttttgttgtttggcctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGGACAGGCTGGAGTTCTTACATTCCCAATTATAATCCAAGGGACATCATT
species | Glycine max |
transcript | GLYMA15G43170.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGEST: gi|193475387|gb|FK441132.1|FK441132
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGEST: gi|208292959|gb|GE089839.1|GE089839
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: AGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTAG GTACATACCAGEST: gi|208322288|gb|GE124765.1|GE124765
genomic: AGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACT-Ggtattttgtt ... cctataacagGTACATACCAG
EST: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGEST: gi|207768691|gb|GD740502.1|GD740502
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGEST: gi|193423835|gb|FK387724.1|FK387724
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG GTAACATACCA
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTA-CATACCA
atgattagtatgagtaccgaacttccttgaatttttgttgtttggcctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGGACAGGCTGGAGTTCTTACATTCCCAATTATAATCCAAGGGACATCATT
aatttttgttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgtttacccttgtttttatgaagtactctctagtttatgattagtatgagtaccgaacttccttgaatttttgttgtttggcctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGGGACAGGCTGGAGTTCTTACATTCCCAATTATAATCCAAGGGACATCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA